Jinlong Ru

The paper reanalyzes published metagenomic sequences of phage cocktails to identify temperate phages and bacterial DNA contamination, highlighting risks for horizontal gene transfer.

Replidec identifies three phage replication cycles from metagenomic data using a Naive Bayes classifier and alignment-based methods, achieving high accuracy in both isolated genomes and simulated sequences.

DeepsmirUD predicts small molecule-mediated regulatory effects on miRNA expression using deep learning, achieving high accuracy and enabling drug repositioning insights.