Author

Vaishnovi Sekar

Stockholm UniversityORCID 0000-0002-6810-1591Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Franziska BonathiD· 2 shared Inna BiryukovaiD· 2 shared Marc R. FriedländeriD· 2 shared Bastian FrommiD· 1 shared Eduardo A. SagredoiD· 1 shared Emilio Mármol‐SáncheziD· 1 shared Etka YapariD· 1 shared Evangelos DoukoumopoulosiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Franziska BonathORCID

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2 papers

Recent·Most cited

GenomicsGenome ResearchPeer-reviewedJan 12, 2026

Landscape of microRNA and target expression variation and covariation in single mouse embryonic stem cells

Marcel Tarbier, Sebastian D. Mackowiak, Vaishnovi Sekar…·Marc R. Friedländer

The paper studies microRNA and target expression variation in mouse embryonic stem cells using genetic perturbation and single-cell RNA-seq, finding four co-expression groups and mixed effects on target variation.

1 citation

mousescRNA-seq

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GenomicsbioRxivPreprintAug 10, 2022

agoTRIBE detects miRNA-target interactions transcriptome-wide in single cells

Vaishnovi Sekar, Emilio Mármol‐Sánchez, Panagiotis Kalogeropoulos…·Marc R. Friedländer

agoTRIBE identifies miRNA-target interactions in single cells using a fusion protein approach, revealing differential targeting across the cell cycle.

DOI 10.1101/2022.08.10.503472

humanscRNA-seq

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