Author

Jalal Baruni

Howard Hughes Medical InstituteORCID 0000-0002-6868-8900Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:mouse· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Liqun LuoiD· 2 shared Aaron M. KershneriD· 1 shared Aaron McGeeveriD· 1 shared Aditi AgrawaliD· 1 shared Ahmad Al‐MoujahediD· 1 shared Ahmad N. NabhaniD· 1 shared Alina A. Alam· 1 shared Ankit S. BagheliD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersNeuroscience

Liqun LuoORCID

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2 papers

Recent·Most cited

Architecture of the Serotonergic Projectome in the Mouse Brain

Jun Ho Song, Drew Friedmann, Yunming Wu, Ashley Moses, Jalal Baruni, Yuan Yuan, Isabella Rana, Kelly Zhao, Tom Hindmarsh Sten, Qian Wang, Shuyun Alina Xiao, Xiaoke Chen, Scott W. Linderman, Liqun Luo

Whole-brain axon tracing in 110 mouse brains divides raphe serotonin neurons into five projectomic groups, tied to transcriptome plus position and to dissociable behavioral effects of depletion.

Cell · Sep 1, 2026Peer-reviewedNeuroscience✦ In-depth digest

Adversarial domain translation networks for fast and accurate integration of large-scale atlas-level single-cell datasets

Jia Zhao, Gefei Wang, Jingsi Ming, Zhixiang Lin, Yang Wang, Snigdha Agarwal, Aditi Agrawal, Ahmad Al‐Moujahed, Alina A. Alam, Megan A. Albertelli, Paul Allegakoen, Thomas H. Ambrosi, Jane Antony, Steven E. Artandi, Fabienne Aujard, , Patricia Kim Phuong Nguyen

Portal integrates large-scale single-cell datasets efficiently and accurately by preserving biological variation across samples, platforms, and species.

Nature Computational Science · May 30, 2022Peer-reviewedBioinformatics