Author

Andrew M. Kropinski

Ontario Veterinary CollegeORCID 0000-0002-6871-6799Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1

Frequent Co-Authors

Benjamin BolduciD· 1 shared Cheng SuniD· 1 shared Dann TurneriD· 1 shared Evelien M. AdriaenssensiD· 1 shared Fangyi WangiD· 1 shared Ho Bin JangiD· 1 shared Huiqi WeniD· 1 shared James Rodney BristeriD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Benjamin BolducORCID

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2 papers

Recent·Most cited

Mining bacterial NGS data vastly expands the complete genomes of temperate phages

Xianglilan Zhang, Ruohan Wang, Xiangcheng Xie, Yunjia Hu, Jianping Wang, Qiang Sun, Xikang Feng, Wei Lin, Shanwei Tong, Wei Yan, Huiqi Wen, Mengyao Wang, Shixiang Zhai, Cheng Sun, Fangyi Wang, , Yigang Tong

This study expands the number of complete temperate phage genomes by over 100-fold using a novel computational method applied to bacterial NGS data.

NAR Genomics and Bioinformatics · Jul 9, 2022Peer-reviewedBioinformatics

Gene sharing networks to automate genome-based prokaryotic viral taxonomy

Ho Bin Jang, Benjamin Bolduc, Olivier Zablocki, Jens H. Kuhn, Simon Roux, Evelien M. Adriaenssens, James Rodney Brister, Andrew M. Kropinski, Mart Krupovìč, Dann Turner, Matthew B. Sullivan

This paper introduces vConTACT 2.0, a network-based tool for prokaryotic virus taxonomy that scales to large datasets and achieves high accuracy in taxonomic assignments.

bioRxiv · Jan 29, 2019 · PreprintBioinformatics