Author

Simon H. Tausch

Robert Koch InstituteORCID 0000-0002-6874-233XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:benchmarking· 2 Organism:human· 2 Assay:metagenomics· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Bernhard Y. RenardiD· 2 shared Tobias P. LokaiD· 2 shared Adam A. WitneyiD· 1 shared Alexander Manuele· 1 shared Allison BlackiD· 1 shared Amogelang R. RaphenyaiD· 1 shared Andreas Andrusch· 1 shared Andreas NitscheiD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Bernhard Y. RenardORCID

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Author profile →

4 papers

Recent·Most cited

hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling

Catarina Inês Mendes, Emma Griffiths, Alexander Manuele, Daniel Fornika, Simon H. Tausch, Thanh Le-Viet, Jody Emile Phelan, Conor Joseph Meehan, Amogelang R. Raphenya, Brian P. Alcock, Elizabeth J. Culp, Federico Lorenzo, María Sol Haim, Adam A. Witney, Allison Black, , Finlay Maguire

hAMRonization standardizes AMR gene detection outputs from multiple tools into a unified format for easier analysis and integration.

bioRxiv · Mar 7, 2024 · PreprintBioinformatics

PathoLive - Real-time pathogen identification from metagenomic Illumina datasets

Simon H. Tausch, Tobias P. Loka, Jakob M. Schulze, Andreas Andrusch, Jeanette Klenner, Piotr Wojciech Dąbrowski, Martin S. Lindner, Andreas Nitsche, Bernhard Y. Renard

PathoLive detects pathogens in real-time from metagenomic data, improving speed and accuracy by prioritizing clinically relevant hits over contaminants and irrelevant sequences.

Life · Aug 30, 2022Peer-reviewedBioinformatics

German-wide interlaboratory study compares consistency, accuracy and reproducibility of whole-genome short read sequencing

Laura Uelze, Maria Borowiak, Markus Bönn, Erik Brinks, Carlus Deneke, Thomas Hankeln, Sylvia Kleta, Larissa Murr, Kerstin Stingl, Kathrin Szabo, Simon H. Tausch, Anne Wöhlke, Burkhard Malorny

This study compares the consistency, accuracy, and reproducibility of whole-genome short read sequencing across ten laboratories using different sequencing platforms and protocols.

Frontiers in Microbiology · Sep 11, 2020Peer-reviewedGenomics

Reliable variant calling during runtime of Illumina sequencing

Tobias P. Loka, Simon H. Tausch, Bernhard Y. Renard

This paper introduces a real-time variant calling method during Illumina sequencing that achieves high accuracy and scalability, enabling faster clinical interventions.

Scientific Reports · Nov 11, 2019Peer-reviewedBioinformatics