Allison Black

hAMRonization standardizes AMR gene detection outputs from multiple tools into a unified format for easier analysis and integration.

The paper tests dimensionality reduction methods on viral genomes to capture genetic relationships without phylogenetic analysis, finding MDS and t-SNE accurately represent known clusters in influenza and SARS-CoV-2.

dms-view is a web-based tool for visualizing DMS data in the context of 3-D protein structures and natural sequence variation.

The paper uses genomic data to show multiple ZIKV introductions and cryptic transmission in Colombia, with most transmission occurring locally.

This paper describes a method to sequence Zika and other virus genomes directly from clinical samples using multiplex PCR and portable sequencing technologies, achieving complete genomes in 1-2 days.

The paper uses ZIKV genomes to estimate the origin and spread of Zika virus in Brazil and the Americas, providing a timeframe for baseline microcephaly rates.