Author

Kuniya Abe

RIKEN BioResource Research CenterORCID 0000-0002-6912-8526Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:mouse· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:ChIP-seq· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alan AshworthiD· 1 shared Chung-Chau HoniD· 1 shared Hiroki UraiD· 1 shared Imad AbugessaisaiD· 1 shared Jonathan MoodyiD· 1 shared Kaori Y. TanakaiD· 1 shared Kazuyuki Mekada· 1 shared Koji NagaoiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperGenomics

Alan AshworthORCID

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3 papers

Recent·Most cited

Complete sequencing of the mouse pseudoautosomal region, the most rapidly evolving 'chromosome'

Takaoki Kasahara, Kazuyuki Mekada, Kuniya Abe, Alan Ashworth, Tadafumi Kato

The paper sequences the mouse pseudoautosomal region, revealing its structure and evolutionary dynamics.

Proceedings of the Japan Academy Series B · Mar 10, 2026Peer-reviewedGenomics

Single-cell transcriptomics, scRNA-Seq and C1 CAGE discovered distinct phases of pluripotency during naïve-to-primed conversion in mice

Michael E. Böttcher, Yuhki Tada, Jonathan Moody, Masayo Kondo, Hiroki Ura, Imad Abugessaisa, Takeya Kasukawa, Chung-Chau Hon, Koji Nagao, Piero Carninci, Kuniya Abe

The paper uses single-cell RNA sequencing and C1 CAGE to identify distinct phases of pluripotency during the naive-to-primed transition in mice.

bioRxiv · Sep 25, 2020 · PreprintGenomics

Cell Type Specific Survey of Epigenetic Modifications by Tandem Chromatin Immunoprecipitation Sequencing

Mari Mito, Mitsutaka Kadota, Kaori Y. Tanaka, Yasuhide Furuta, Kuniya Abe, Shintaro Iwasaki, Shinichi Nakagawa

The paper introduces tChIP-Seq, a method to analyze cell type-specific epigenetic modifications, identifying neuronal genes and unknown functions in cortical neurons.

Scientific Reports · Jan 12, 2018Peer-reviewedMolecular Biology