Author

Israel Aguilar-Ordóñez

National Institute of Genomic MedicineORCID 0000-0002-6980-1151Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Research Focus:benchmarking· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

Adrien Le MeuriD· 1 shared Anders GötherströmiD· 1 shared Andrew E. JaffeiD· 1 shared Antonio Blanchet· 1 shared Austin W. ReynoldsiD· 1 shared BaDoi N. PhaniD· 1 shared Brianna K. BarryiD· 1 shared Carlos Fabián Flores-JassoiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperGenomics

Adrien Le MeurORCID

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4 papers

Recent·Most cited

GenomicsCommunications BiologyPeer-reviewedJul 13, 2026

Ancestry, admixture, and pathogens in contemporaneous Neolithic farmers and foragers on the Island of Gotland

Magdalena Fraser, Federico Sánchez‐Quinto, Emrah Kırdök…·Mattias Jakobsson

The paper analyzes ancestry, admixture, and pathogens in Neolithic farmers and foragers from Gotland, finding recent gene flow and widespread Yersinia pestis strains.

1 citation

humanwhole-genome sequencing

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Evolutionary BiologyGenome Biology and EvolutionPeer-reviewedMar 1, 2025

Whole genome sequencing of 76 Mexican Indigenous reveals recent selection signatures linked to pathogens and diet adaptation.

Fernanda Mirón-Toruño, Enrique Morett, Israel Aguilar-Ordóñez, Austin W. Reynolds

This study uses whole genome sequencing of 76 Mexican Indigenous individuals to identify natural selection signatures linked to pathogens and diet adaptation across three geographic regions.

3 citations

humanwhole-genome sequencing

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BioinformaticsBMC BioinformaticsPeer-reviewedMay 1, 2021

SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses

Nicholas J. Eagles, Emily E. Burke, Jacob Leonard…·Leonardo Collado‐Torres

SPEAQeasy provides a user-friendly, scalable RNA-seq pipeline that simplifies data processing and connects to R/Bioconductor tools for downstream analysis.

24 citations

bulk RNA-seqexperimental assay

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BioinformaticsbioRxivPreprintAug 16, 2019

ExtendAlign: the post-analysis tool to correct and improve the alignment of dissimilar short sequences

Mariana Flores-Torres, Laura Gómez-Romero, Joshua I. Haase-Hernández…·Carlos Fabián Flores-Jasso

ExtendAlign improves alignment accuracy for dissimilar short sequences by correcting errors in existing alignments.

DOI 10.1101/475707

DNA methylationwhole-genome sequencing

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