Author

Yasmine Alwie

Medizinische Hochschule HannoverORCID 0000-0002-7001-5641Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:long-read sequencing· 2 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:virus· 1

Frequent Co-Authors

Daniel Pearce DepledgeiD· 2 shared Ruth VerstrateniD· 2 shared Amy FitzpatrickiD· 1 shared Angus C. WilsoniD· 1 shared Elene LoliashviliiD· 1 shared Erik FuhrmanniD· 1 shared Jonas LeinsiD· 1 shared Jonathan S. AbebeiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersSystems Biology

Daniel Pearce DepledgeORCID

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2 papers

Recent·Most cited

Defining expansions and perturbations to the RNA polymerase III transcriptome and epitranscriptome by modified direct RNA nanopore sequencing

Ruth Verstraten, Pierina Cetraro, Amy Fitzpatrick, Yasmine Alwie, Yannick Noah Frommeyer, Elene Loliashvili, Saskia Catherina Stein, Susanne Häußler, Werner J. D. Ouwendijk, Daniel Pearce Depledge

This paper introduces DRAP3R, a method for analyzing Pol III transcribed RNAs and their modifications, revealing new transcripts and epitranscriptomic changes in infected cells.

Nature Communications · Jan 6, 2026Peer-reviewedSystems Biology

Nanopore Guided Annotation of Transcriptome Architectures

Jonathan S. Abebe, Yasmine Alwie, Erik Fuhrmann, Jonas Leins, Julia Mai, Ruth Verstraten, Sabrina Schreiner, Angus C. Wilson, Daniel Pearce Depledge

The paper develops a novel method for high-resolution transcriptome annotation from Nanopore DRS data, demonstrating its effectiveness on both synthetic and real datasets, including a new annotation of human adenovirus type F 41.

mSystems · Jul 2, 2024Peer-reviewedBioinformatics