Author

Charles M Burnham

University of Arkansas for Medical SciencesORCID 0000-0002-7002-9146Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Approach:experimental assay· 1 Organism:human· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Birgitte RegenbergiD· 2 shared Intawat NookaewiD· 2 shared Jesús Delgado‐CalleiD· 2 shared Visanu WanchaiiD· 2 shared Alexei G. BasnakianiD· 1 shared Alongkorn KurilungiD· 1 shared Gerard ArreyiD· 1 shared Maria Charlotte Tümmler· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Birgitte RegenbergORCID

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2 papers

Recent·Most cited

An Enhancement of Extrachromosomal Circular DNA Enrichment and Amplification to Address the Extreme Low Overlap Between Replicates

Charles M Burnham, Alongkorn Kurilung, Visanu Wanchai, Birgitte Regenberg, Jesús Delgado‐Calle, Alexei G. Basnakian, Intawat Nookaew

This paper improves eccDNA enrichment and amplification methods, achieving >50% overlap in technical replicates compared to <1% previously observed.

Journal of Biological Chemistry · Feb 20, 2026Peer-reviewedGenomics

Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences.

Visanu Wanchai, Piroon Jenjaroenpun, Thongpan Leangapichart, Gerard Arrey, Charles M Burnham, Maria Charlotte Tümmler, Jesús Delgado‐Calle, Birgitte Regenberg, Intawat Nookaew

This paper introduces CReSIL 2.0, a software suite for identifying and characterizing extrachromosomal circular DNA from long-read sequences, achieving high accuracy in simulated data.

Briefings in Bioinformatics · Sep 2, 2022Peer-reviewedBioinformatics