Author

Serge A. van de Pavert

Centre National de la Recherche ScientifiqueORCID 0000-0002-7147-4380Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Bertrand Escalière· 1 shared Carole Siret· 1 shared Chuang DongiD· 1 shared Denis PuthieriD· 1 shared Jean‐Marc Navarro· 1 shared Jessica ChevallieriD· 1 shared Julie BavaisiD· 1 shared Laurine Binet· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperImmunology

Bertrand Escalière

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2 papers

Recent·Most cited

SciGeneX: Enhancing transcriptional analysis through gene module detection in single-cell and spatial transcriptomics data.

Julie Bavais, Jessica Chevallier, Lionel Spinelli, Serge A. van de Pavert, Denis Puthier

SciGeneX detects gene modules in single-cell and spatial transcriptomics data to reveal cell populations, outperforming existing methods and uncovering rare cell types in human thymus data.

NAR Genomics and Bioinformatics · Mar 29, 2025Peer-reviewedBioinformatics

Pre-plasma cells proliferate and differentiate at the germinal center-medulla interface of antigen-draining lymph nodes

Laurine Binet, Lucas Bremond, Marius Duparc, Chuang Dong, Léa David, Noudjoud Attaf, Laurine Gil, Matthieu Fallet, Thomas Boudier, Bertrand Escalière, Lionel Chasson, Myriam Moussa, Lucas Bertoia, Samuel Origlio, Sylvain Bigot, , Pierre Milpied

The paper tracks GC-derived B cells in lymph nodes to identify PrePC cells and their transition to plasma cells, revealing spatial and transcriptional changes during differentiation.

bioRxiv · Jul 26, 2024 · PreprintImmunology