Author

Ying Qiao

Cornell UniversityORCID 0000-0002-7175-7129Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:variant calling· 4 Assay:whole-genome sequencing· 4 Organism:human· 3 Research Focus:benchmarking· 2 Research Focus:variant effect prediction· 2 Approach:benchmark study· 1 Research Focus:clustering· 1

Frequent Co-Authors

Amy L. WilliamsiD· 4 shared Jens SannerudiD· 2 shared Joanne E. CurraniD· 2 shared John BlangeroiD· 2 shared Caroline HaywardiD· 1 shared Daniel N. SeidmaniD· 1 shared Donna M. LehmaniD· 1 shared Ethan M. JewettiD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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4 shared papersGenetics

Amy L. WilliamsORCID

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4 papers

Recent·Most cited

Reconstructing parent genomes using siblings and other relatives

Ying Qiao, Ethan M. Jewett, Kimberly F. McManus, William A. Freyman, Joanne E. Curran, Sarah Williams‐Blangero, John Blangero, Amy L. Williams

HAPI-RECAP reconstructs parent genomes from full siblings and relatives, achieving high accuracy and enabling phenotypic analyses and pedigree reconstruction.

bioRxiv · May 10, 2024 · PreprintBioinformatics

Evaluating the utility of identity-by-descent segment numbers for relatedness inference via information theory and classification

Jesse Smith, Ying Qiao, Amy L. Williams

This study evaluates using IBD segment numbers for relatedness inference, finding they modestly improve recall but are limited by IBD detection accuracy.

G3 Genes Genomes Genetics · Mar 28, 2022Peer-reviewedGenetics

Distinguishing pedigree relationships using multi-way identical by descent sharing and sex-specific genetic maps

Ying Qiao, Jens Sannerud, Sayantani Basu-Roy, Caroline Hayward, Amy L. Williams

CREST identifies pedigree relationships using IBD sharing and sex-specific genetic maps, achieving high accuracy in simulated and real datasets.

The American Journal of Human Genetics · Dec 31, 2020Peer-reviewedGenetics

Crossover interference and sex-specific genetic maps shape identical by descent sharing in close relatives

Madison Caballero, Daniel N. Seidman, Ying Qiao, Jens Sannerud, Thomas D. Dyer, Donna M. Lehman, Joanne E. Curran, Ravindranath Duggirala, John Blangero, Shai Carmi, Amy L. Williams

The paper develops Ped-sim, a method to simulate genetic data for relatives, showing that sex-specific maps and crossover interference significantly affect IBD sharing patterns.

PLoS Genetics · Dec 20, 2019Peer-reviewedGenetics