Madison Caballero

The paper estimates heritability of postpartum psychosis using genomic data and identifies potential risk genes, showing overlaps with psychiatric and autoimmune disorders.

This study identifies moderate effect size genes in ASD through a gene pairing approach, showing their combined contribution to ASD liability.

This study evaluates methods for improving genome annotation in non-model plants by testing workflows and inputs across five plant genomes.

The paper investigates mutation landscape heterogeneity across individuals and cell types, identifying replication timing biases and mutation load as key factors.

The paper shows Rif1 promotes underreplication in Drosophila polyploid cells through both upstream and downstream roles relative to SUUR in controlling replication timing.

This paper presents the first genome assembly of the giant sequoia, enabling analysis of disease resistance genes for conservation and evolutionary studies.

The paper develops Ped-sim, a method to simulate genetic data for relatives, showing that sex-specific maps and crossover interference significantly affect IBD sharing patterns.

The paper constructs high-quality genome annotations for six Juglans species and one outgroup, revealing gene family contractions and an ancient whole genome duplication in Juglandaceae.

gFACs filters, analyzes, and converts gene models to unify genome annotations across different frameworks, improving accuracy and consistency.