Author

Jingbo Shang

University of California San DiegoORCID 0000-0002-7249-4404Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scATAC-seq· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Allen WangiD· 1 shared Anna Marie YannyiD· 1 shared António Pinto‐DuarteiD· 1 shared Bing ReniD· 1 shared Boaz P. LeviiD· 1 shared Chenxu ZhuiD· 1 shared Christopher Dirk KeeneiD· 1 shared Colin KerniD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperNeuroscience

Allen WangORCID

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2 papers

Recent·Most cited

A comparative atlas of single-cell chromatin accessibility in the human brain

Yang Eric Li, Sebastian Preißl, Michael Miller, Nicholas D. Johnson, Zihan Wang, Henry Jiao, Chenxu Zhu, Zhaoning Wang, Yang Xie, Olivier Poirion, Colin Kern, António Pinto‐Duarte, Wei Tian, Kimberly Siletti, Nora Emerson, , Bing Ren

The paper constructs a single-cell chromatin accessibility atlas of the human brain, identifies cell-type-specific regulatory elements, and develops models to predict regulatory function of disease risk variants.

Science · Oct 12, 2023Peer-reviewedNeuroscience

Cross-type Biomedical Named Entity Recognition with Deep Multi-Task Learning

Xuan Wang, Yu Zhang, Xiang Ren, Yuhao Zhang, Marinka Žitnik, Jingbo Shang, Curtis P. Langlotz, Jiawei Han

The paper introduces a multi-task learning framework for biomedical named entity recognition that improves performance by sharing information across entity types.

Bioinformatics · Oct 10, 2018Peer-reviewedBioinformatics