Author

Marie Trussart

The University of MelbourneORCID 0000-0002-7258-7272Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:batch correction / integration· 2 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Terence Paul SpeediD· 3 shared A Schulze· 1 shared Alan F. RubiniD· 1 shared Andrew KeniryiD· 1 shared Arne W. MouldiD· 1 shared AT PapenfussiD· 1 shared Charis E. TehiD· 1 shared Daniel H.D. GrayiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersBioinformatics

Terence Paul SpeedORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Fast, accurate and scalable normalization for RNA sequencing data with the RUVprps software package

Marie Trussart, Momeneh Foroutan, Michael Milton, Himisha Beltran, Terence Paul Speed, Ramyar Molania

The paper introduces RUVprps, a software package for normalizing RNA-seq data by removing unwanted variation, offering improved performance and features for analysis.

bioRxiv · Jan 29, 2026 · PreprintBioinformatics

Robust differential composition and variability analysis for multisample cell omics

Stefano Mangiola, A Schulze, Marie Trussart, E Zozaya, Mengyao Ma, Zheng Gao, Alan F. Rubin, Terence Paul Speed, Heejung Shim, AT Papenfuss

The paper introduces sccomp, a method for differential composition and variability analysis in cell omics data, showing improved performance over existing methods and identifying novel biological insights in breast cancer.

bioRxiv · Mar 4, 2022 · PreprintBioinformatics

CytofRUV: Removing unwanted variation to integrate multiple CyTOF datasets

Marie Trussart, Charis E. Teh, Tania Tan, Lawrence Leong, Daniel H.D. Gray, Terence Paul Speed

CytofRUV integrates multiple CyTOF datasets by correcting batch effects to compare cellular changes across patients and conditions.

eLife · Sep 7, 2020Peer-reviewedBioinformatics

Long-range chromatin interactions on the inactive X and at Hox clusters are regulated by the non-canonical SMC protein Smchd1.

Natasha Jansz, Andrew Keniry, Marie Trussart, Heidi Bildsoe, Tamara J Beck, Ian D. Tonks, Arne W. Mould, Peter F. Hickey, Kelsey A. Breslin, Megan Iminitoff, Matthew E. Ritchie, Edwina McGlinn, Graham F. Kay, James M. Murphy, Marnie E. Blewitt

This study identifies Smchd1 as a regulator of long-range chromatin interactions, showing context-dependent effects on transcription and chromatin structure.

bioRxiv · Jun 8, 2018 · PreprintMolecular Biology