AMRgen: an R package for antimicrobial resistance genotype-phenotype analysis
Kathryn E. Holt, Silvia Argimón, Domnique L. Chaput, Natacha Couto, Zoe A. Dyson, Ebenezer Foster-Nyarko, Richard N. Goodman, Jane Hawkey, Gwenan M. Knight, Dorottya Nagy, Arjun Balmiki Prasad, Leonor Sánchez-Busó, Kara K. Tsang, Matthijs Simeon Berends
AMRgen is an R package that links antimicrobial resistance genotypes to phenotypes through data harmonization, analysis, and visualization, using surveillance data from priority pathogens.
bioRxiv · May 4, 2026 · PreprintMicrobiology