Richard N. Goodman

The paper uses shotgun metagenomic sequencing to analyze microbial communities and antimicrobial resistance genes across five urban surface types in Liverpool, finding distinct microbial and resistance profiles with higher ARG abundance on frequently contacted surfaces.

This study examines how sub-inhibitory concentrations of ceftriaxone, combined with colistin and kanamycin, affect intracellular transposition in Escherichia coli, identifying thresholds for environmental impact.

This study compares laboratory evolution of piperacillin-tazobactam resistance in Klebsiella grimontii with within-patient resistance evolution, showing that small population bottlenecks reproduce key resistance mechanisms observed in clinical isolates.

This study isolates a Paenibacillus polymyxa strain, characterizes its polymyxin A biosynthetic gene cluster, and finds that resistance genes mcr-1 and mcr-4 confer resistance to polymyxin A.

AMRgen is an R package that links antimicrobial resistance genotypes to phenotypes through data harmonization, analysis, and visualization, using surveillance data from priority pathogens.

The paper uses whole-genome sequencing to study ESBL-Ec transmission networks in rural Malawi, finding high colonization rates and multi-household spread.

This study compares genomic and phenotypic differences between faecal and bloodstream isolates from the same patients to understand pathogenesis of Gram-negative bloodstream infections.

This study uses shotgun metagenomic analysis of oral saliva from children with noma to identify Treponema sp. A as a novel disease-associated organism and highlights antimicrobial resistance concerns.

The paper compares genomic data from blood and faecal isolates of E. coli and K. pneumoniae from neonatal patients to determine if bloodstream infections originated from the gastrointestinal tract.

The paper investigates the re-emerging chloramphenicol susceptibility in ESBL-producing Enterobacterales by analyzing genotype-phenotype discordance and molecular mechanisms.