Author
London School of Hygiene & Tropical MedicineORCID 0000-0001-7742-8855Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Kara K. Tsang, Iana Amke, David M. Aanensen…·Carla Rodrigues
The paper develops a rules-based classifier to predict ciprofloxacin resistance in Klebsiella pneumoniae from genotype data and demonstrates its global distribution association with quinolone consumption.
Kathryn E. Holt, Silvia Argimón, Domnique L. Chaput…·Matthijs Simeon Berends
AMRgen is an R package that links antimicrobial resistance genotypes to phenotypes through data harmonization, analysis, and visualization, using surveillance data from priority pathogens.
Kara K. Tsang, Margaret M. C. Lam, Ryan R. Wick…·KlebNET AMR Genotype-Phenotype Group
This paper reclassifies SHV β-lactamase alleles in K. pneumoniae genomes based on mutations, improving genotype-phenotype understanding and updating the Kleborate tool.
Ebenezer Foster-Nyarko, Hugh Cottingham, Ryan R. Wick…·Kathryn E. Holt
This study evaluates ONT-only assemblies for genomic surveillance of Klebsiella pneumoniae, showing reliable MLST, K type, and AMR detection but challenges in cluster detection.