Huan Zhong

WrapEvoFS enables auditable feature compression with regret-constrained representative locking

WrapEvoFS selects a representative feature set from stochastic searches with regret constraints, ensuring auditable and reproducible results without claiming predictive superiority.

Honey bee (Apis mellifera) gut microbiome associations with viruses and pesticides across Canadian agroecosystems

This study examines how pesticide exposure and RNA virus loadings affect the honey bee gut microbiome across Canadian agroecosystems, identifying consistent bacterial-virus and pesticide-microbe associations.

Comparative Proteomics Across Tissues and Crop Agroecosystems Reveals Agricultural Stressor Responses in the Western Honey Bee

The paper uses tissue-resolved proteomics to analyze how pesticide and pathogen stressors affect honey bee tissues across crop ecosystems, finding stable tissue-specific patterns and crop-associated changes.

Recovering biological structure in sparse single-cell proteomics with GIRAFI

GIRAFI improves sparse single-cell proteomics by imputing missing values and revealing cell states using graph-informed statistical learning, outperforming existing methods and recovering biological structure.

Bridging Simplicity and Depth in Single-Cell Proteomics: A Cost-Effective Workflow and Expanded Framework for Data Evaluation

The paper introduces a cost-effective single-cell proteomics workflow and a data evaluation framework to improve data quality and biological interpretability.

SPIN: Inkjet-Driven Nanowell Workflow for Scalable and Sensitive Single-Cell Proteomics

The paper introduces a single-cell proteomics workflow using an inkjet printer and nanowell chip to improve protein recovery and throughput.

TagSeqTools: a flexible and comprehensive analysis pipeline for NAD tagSeq data

TagSeqTools is a pipeline for analyzing NAD tagSeq data to identify and quantify NAD+-capped RNAs using Oxford Nanopore long-read sequencing.