Author

Rita Jui-Hsien Lu

Academia SinicaORCID 0000-0002-7434-6544Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:variant calling· 2 Organism:Arabidopsis· 1 Assay:ATAC-seq· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Pao‐Yang CheniD· 3 shared Akihisa OsakabeiD· 1 shared Archana Allishe· 1 shared C Wang· 1 shared Chan‐Yi Ivy LiniD· 1 shared Chiung‐Chih ChangiD· 1 shared Dongdong Zhang· 1 shared Frédéric BergeriD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Pao‐Yang ChenORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

An Agentic Platform for Drug Repurposing Unified across Molecular, Phenotypic, and Clinical Scales

C Wang, Mohamed El Moussaoui, Dongdong Zhang, Prathiksha Prabhakaraalva, Serge Merzliakov, Rita Jui-Hsien Lu, Nabila Zaman, Goutam Chakraborty, Kuan‐lin Huang

LinkD is a drug repurposing platform that integrates molecular, phenotypic, and clinical data to prioritize drugs, showing reduced prostate cancer incidence with beta-blockers.

bioRxiv · Jun 7, 2026 · PreprintBioinformatics

The histone variant H2A.W cooperates with chromatin modifications and linker histone H1 to maintain transcriptional silencing of transposons in Arabidopsis

Pierre Bourguet, Ramesh Yelagandula, Taiko Kim To, Akihisa Osakabe, Archana Allishe, Rita Jui-Hsien Lu, Tetsuji Kakutani, Pao‐Yang Chen, Frédéric Berger

The paper shows that H2A.W and H3K9me work together with H1 and CH methylation to silence transposons in Arabidopsis.

bioRxiv · May 31, 2022 · PreprintGenomics

Mycena genomes resolve the evolution of fungal bioluminescence

Huei‐Mien Ke, Hsin‐Han Lee, Chan‐Yi Ivy Lin, Yu‐Ching Liu, Min Lu, Jo‐Wei Allison Hsieh, Chiung‐Chih Chang, Pei-Hsuan Wu, Mei‐Yeh Jade Lu, Jeng-Yi Li, Gaus Shang, Rita Jui-Hsien Lu, László G. Nagy, Pao‐Yang Chen, Hsiao‐Wei Kao, Isheng Jason Tsai

The paper sequenced genomes of five bioluminescent Mycena fungi to study the evolution of luciferase clusters and bioluminescence, finding that the trait originated in a common ancestor and was lost in some lineages.

Proceedings of the National Academy of Sciences · Nov 23, 2020Peer-reviewedGenomics

Assessing chromatin accessibility in maize using ATAC-seq

Yi-Jing Lee, Pearl Pei-Chun Chang, Rita Jui-Hsien Lu, Pao‐Yang Chen, Rachel Wang

This study adapts ATAC-seq for maize to assess chromatin accessibility, demonstrating a simple protocol that avoids cell sorting and uses standard equipment.

bioRxiv · Jan 22, 2019 · PreprintGenomics