Author

Michael Ginda

Indiana University BloomingtonORCID 0000-0002-7500-8096Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Organism:human· 2 Assay:proteomics· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Danial QaurooniiD· 2 shared Katy BörneriD· 2 shared Kristin ArdlieiD· 2 shared Yashvardhan JainiD· 2 shared Adel EskarosiD· 1 shared Albert BurgeriD· 1 shared Aleix Puig-BarbeiD· 1 shared Amy BernardiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Danial QaurooniORCID

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2 papers

Recent·Most cited

Cell type populations for 3D anatomical structures of the Human Reference Atlas

Andreas Bueckle, Bruce W. Herr, L. Chen, Daniel Bolin, Danial Qaurooni, Michael Ginda, Yashvardhan Jain, Aleix Puig-Barbe, Kristin Ardlie, Fusheng Wang, Katy Börner

The paper quantifies cell type populations across 3D anatomical structures using single-cell transcriptomics and proteomics data from the Human Reference Atlas.

Scientific Data · Mar 19, 2026Peer-reviewedBioinformatics

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage

Katy Börner, Philip D. Blood, Jonathan C. Silverstein, Matthew Ruffalo, Rahul Satija, Sarah Amalia Teichmann, Gloria Pryhuber, Ravi S. Misra, Jeffrey M. Purkerson, Jean Fan, John W. Hickey, Gesmira Molla, Chuan Xu, Yun Zhang, Griffin M. Weber, , Vilas Menon

This paper describes the construction and usage of the Human Reference Atlas (HRA) v2.0, which integrates multiscale data across 36 organs and provides tools for analysis and visualization.

Nature Methods · Mar 13, 2025Peer-reviewedBioinformatics