Author

Isis Ricaño-Ponce

University Medical Center GroningenORCID 0000-0002-7530-9526Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Annique ClaringbouldiD· 2 shared Cisca WijmengaiD· 2 shared Iris H. JonkersiD· 2 shared Lude FrankeiD· 2 shared Maria Magdalena ZorroiD· 2 shared Raúl Aguirre‐GamboaiD· 2 shared Sebo WithoffiD· 2 shared Serena SannaiD· 2 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenetics

Annique ClaringbouldORCID

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2 papers

Recent·Most cited

Systematic prioritization of candidate genes in disease loci identifies TRAFD1 as a master regulator of IFNγ signalling in celiac disease

Adriaan van der Graaf, Maria Magdalena Zorro, Annique Claringbould, Urmo Võsa, Raúl Aguirre‐Gamboa, Chan Li, Joram Mooiweer, Isis Ricaño-Ponce, Zuzanna Borek, Frits Koning, Yvonne Kooy–Winkelaar, Ludvig Magne Sollid, Shuo‐Wang Qiao, Vinod Kumar, Yang Li, , Iris H. Jonkers

The paper identifies TRAFD1 as a master regulator of IFNγ signalling in celiac disease by systematically prioritizing candidate genes in disease loci using multiple computational methods.

Frontiers in Genetics · Jan 25, 2021Peer-reviewedGenetics

Deconvolution of bulk blood eQTL effects into immune cell subpopulations

Raúl Aguirre‐Gamboa, Niek de Klein, Jennifer Di Tommaso, Annique Claringbould, Monique G.P. van der Wijst, Dylan H. de Vries, Harm Brugge, Roy Oelen, Urmo Võsa, Maria Magdalena Zorro, Xiaojing Chu, Olivier B. Bakker, Zuzanna Borek, Isis Ricaño-Ponce, Patrick Deelen, , Yang Li

The paper introduces Decon2, a method to deconvolute bulk blood eQTL effects into immune cell subpopulations, showing high concordance with experimental and single-cell studies.

BMC Bioinformatics · Jun 12, 2020Peer-reviewedGenomics