Author

Tatiana E. Farafonova

Institute of Biomedical ChemistryORCID 0000-0002-7633-3034Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Systems Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 3 Assay:proteomics· 3 Approach:statistical model· 3 Organism:human· 2 Research Focus:cell type annotation· 1 Organism:Drosophila· 1 Approach:experimental assay· 1

Frequent Co-Authors

Victor Gavrilovich ZgodaiD· 3 shared Anna A. KliuchnikovaiD· 2 shared Anton O. GoncharoviD· 2 shared Lev I. LevitskyiD· 2 shared Mark V. IvanoviD· 2 shared Mikhail A. PyatnitskiyiD· 2 shared Mikhail V. GorshkoviD· 2 shared Sergei A. MoshkovskiiiD· 2 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersSystems Biology

Victor Gavrilovich ZgodaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Massive proteogenomic reanalysis of publicly available proteomic datasets of human tissues in search for protein recoding via adenosine-to-inosine RNA editing

Lev I. Levitsky, Mark V. Ivanov, Anton O. Goncharov, Anna A. Kliuchnikova, Julia A. Bubis, Anna A. Lobas, Elizaveta M. Solovyeva, Mikhail A. Pyatnitskiy, Ruslan K. Ovchinnikov, Michail S. Kukharsky, Tatiana E. Farafonova, Svetlana E. Novikova, Victor Gavrilovich Zgoda, Irina A. Tarasova, Mikhail V. Gorshkov, Sergei A. Moshkovskii

The paper reanalyzes proteomic datasets to identify ADAR-mediated RNA editing events and finds 18 core recoded protein sites across human tissues.

Journal of Proteome Research · May 9, 2023Peer-reviewedBioinformatics

Number of detected proteins as the function of the sensitivity of proteomic technology in human liver cells

Nikita E. Vavilov, Ekaterina V. Ilgisonis, Andrey Lisitsa, Elena A. Ponomarenko, Tatiana E. Farafonova, Olga Tikhonova, Victor Gavrilovich Zgoda, Аlexander Archakov

The study assesses proteomic sensitivity in human liver cells and identifies 134 proteins encoded by chromosome 18, finding limited overlap with transcriptomic data due to lower proteomic sensitivity.

Current Protein and Peptide Science · Apr 1, 2022Peer-reviewedSystems Biology

Proteome-Wide Analysis of ADAR-mediated Messenger RNA Editing During Fruit Fly Ontogeny

Anna A. Kliuchnikova, Anton O. Goncharov, Lev I. Levitsky, Mikhail A. Pyatnitskiy, Svetlana E. Novikova, Ksenia G. Kuznetsova, Mark V. Ivanov, Irina Y. Ilina, Tatiana E. Farafonova, Victor Gavrilovich Zgoda, Mikhail V. Gorshkov, Sergei A. Moshkovskii

The paper identifies ADAR-mediated RNA editing sites in Drosophila proteomes across developmental stages and shows editing is phase-specific and enriched in synaptic and actomyosin functions.

Journal of Proteome Research · Aug 31, 2020Peer-reviewedSystems Biology