Author

James B Procter

University of DundeeORCID 0000-0002-7865-7382Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

Geoffrey J. BartoniD· 2 shared Andrea SchafferhansiD· 1 shared Bosco K. Ho· 1 shared Burkhard RostiD· 1 shared Christian DallagoiD· 1 shared Christian StolteiD· 1 shared Jennifer R. FlemingiD· 1 shared Kay DiederichsiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Geoffrey J. BartonORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Slivka and Slivka-bio: a lightweight framework for presenting executables as web services and its application in bioinformatics.

Mateusz Warowny, Thomas A. Down, Stuart A. MacGowan, Kiran Mukhyala, Geoffrey J. Barton, James B Procter

Slivka and Slivka-bio provide a lightweight framework for deploying bioinformatics tools as web services, enabling easy execution of code via HTTP and demonstrating with 15+ protein and RNA analysis tools.

bioRxiv · May 27, 2026 · PreprintBioinformatics

Sequence clustering with PaSiMap in Jalview

Thomas Morell, James B Procter, Geoffrey J. Barton, Kay Diederichs, Olga M. Mayans, Jennifer R. Fleming

The paper introduces a protocol for using PaSiMap within Jalview to analyze protein-sequence relationships and provides an R script for data visualization.

STAR Protocols · Feb 26, 2025Peer-reviewedBiochemistry

SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity

Sean I O’Donoghue, Andrea Schafferhans, Neblina Sikta, Christian Stolte, Sandeep Kaur, Bosco K. Ho, Stuart Anderson, James B Procter, Christian Dallago, Nicola Bordin, Matt Adcock, Burkhard Rost

The paper generates 872 structural models of SARS-CoV-2 proteins and creates a structural coverage map to help researchers understand viral mechanisms and immune disruption.

bioRxiv · Jul 16, 2020 · PreprintBioinformatics