Leonid Oliker

GenomeFace: a deep learning-based metagenome binner trained on 43,000 microbial genomes

GenomeFace improves metagenomic binning by combining composition and environmental abundance networks, producing more near-complete genomes faster than existing methods.

Critical Assessment of Metagenome Interpretation - the second round of challenges

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

GPU accelerated partial order multiple sequencealignment for long reads self-correction

The paper introduces a GPU-accelerated partial order alignment method for improving the efficiency of long read error correction in sequencing technologies.