Author

Shaina L. Carroll

Broad InstituteORCID 0000-0002-8051-5850Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

Alex K. ShalekiD· 1 shared Alexandra–Chloé VillaniiD· 1 shared Amanda J. KedaigleiD· 1 shared Andrew Ly· 1 shared Ashley K. Liu· 1 shared Aviv RegeviD· 1 shared Boaz BarakiD· 1 shared Cynthia C. Hession· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Alex K. ShalekORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

ImmunologybioRxivPreprintNov 4, 2025

Identification of distinct cDC2 subpopulations that direct microbiota-specific T cell differentiation

Shaina L. Carroll, Andrew Ly, Ashley K. Liu…·Gregory M. Barton

The paper identifies distinct cDC2 subpopulations that direct microbiota-specific T cell differentiation through varied interactions.

DOI 10.1101/2025.11.04.686414

mousebulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintMay 23, 2019

✦ In-depth digest

Systematic comparative analysis of single cell RNA-sequencing methods

Jiarui Ding, Xian Adiconis, Sean Simmons…·Joshua Z. Levin

Seven single-cell and single-nucleus protocols run side by side on the same cell lines, PBMCs and mouse cortex, analysed through one pipeline: 10x Chromium led the high-throughput methods.

106 citations

𝕏 PostBluesky