Author

Andrew Ly

University of California, Berkeley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Gregory M. BartoniD· 2 shared Ali ToutiD· 1 shared Allon WagneriD· 1 shared Ashley K. Liu· 1 shared Daniel MucidaiD· 1 shared Gabriel D. VictoraiD· 1 shared Jessica N. WitchleyiD· 1 shared Lara Vetter· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersImmunology

Gregory M. BartonORCID

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2 papers

Recent·Most cited

Profiling of intestinal T cells reveals antigen-specific dependency on early-life programming for the generation of microbiota-reactive Tregs

Lara Vetter, Jessica N. Witchley, So Hyun Ahn, R. Camille Brewer, Andrew Ly, Ali Tout, Allon Wagner, Gregory M. Barton

This study profiles intestinal T cell responses to the microbiota, revealing antigen-specific dependencies on early-life programming for generating microbiota-reactive Tregs.

bioRxiv · Sep 29, 2026 · PreprintImmunology

Identification of distinct cDC2 subpopulations that direct microbiota-specific T cell differentiation

Shaina L. Carroll, Andrew Ly, Ashley K. Liu, Maria Cecília Campos Canesso, Gabriel D. Victora, Daniel Mucida, Gregory M. Barton

The paper identifies distinct cDC2 subpopulations that direct microbiota-specific T cell differentiation through varied interactions.

bioRxiv · Nov 4, 2025 · PreprintImmunology