Author

Jonas Reeb

Technical University of MunichORCID 0000-0002-8131-660XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Organism:C. elegans· 1 Organism:Drosophila· 1 Assay:protein sequence· 1 Assay:proteomics· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Ahmet Süreyya RifaioğluiD· 1 shared Alan J. MedlariD· 1 shared Alberto PaccanaroiD· 1 shared Alessandro PetriniiD· 1 shared Alex Alves FreitasiD· 1 shared Alex W. CrockeriD· 1 shared Alex Warwick VesztrocyiD· 1 shared Alexandra J. LeeiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ahmet Süreyya RifaioğluORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Variant effect predictions capture some aspects of deep mutational scanning experiments

Jonas Reeb, Theresa Wirth, Burkhard Rost

The paper evaluates variant effect prediction methods against DMS data, finding that some methods capture aspects of variant effects but none perfectly, with Envision performing best for precise effect prediction.

BMC Bioinformatics · Mar 17, 2020Peer-reviewedBioinformatics

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George P. Georghiou, Huy N. Nguyen, Md-Nafiz Hamid, Larry Davis, Tunca Doğan, Volkan Atalay, Ahmet Süreyya Rifaioğlu, Alperen Dalkıran, , Enrico Lavezzo

The paper reports results from the CAFA3 challenge, showing improved computational protein function prediction and new annotations for over 1000 genes through experimental screens in C. albicans, P. aureginosa, and Drosophila.

Genome biology · Nov 19, 2019Peer-reviewedBioinformatics