Author

Rafał Kolenda

Wrocław University of Environmental and Life SciencesORCID 0000-0002-8145-579XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1

Frequent Co-Authors

Agnieszka StrzałkaiD· 1 shared Anna Magdalena Zawilak-PawlikiD· 1 shared Chen MengiD· 1 shared Christina LudwigiD· 1 shared Dominik RafacziD· 1 shared Filip PietluchiD· 1 shared Gaetan J. A. ThillieziD· 1 shared Haider Al-KhanaqiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperMolecular Biology

Agnieszka StrzałkaORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyPLoS GeneticsPeer-reviewedMay 2, 2025

Reversible excision of the wzy locus in Salmonella Typhimurium may aid recovery following phage predation

Oliver J. Charity, Gaetan J. A. Thilliez, Haider Al-Khanaq…·Robert A. Kingsley

This study identifies a reversible genetic mechanism in Salmonella Typhimurium that confers phage resistance by deleting the wzy locus, enabling recovery after phage predation.

3 citations

bacteria (other)experimental assay

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Molecular BiologyNature CommunicationsPeer-reviewedOct 23, 2023

Profiling of the Helicobacter pylori redox switch HP1021 regulon using a multi-omics approach

Mateusz Noszka, Agnieszka Strzałka, Jakub Muraszko…·Anna Magdalena Zawilak-Pawlik

This study identifies HP1021 as a regulator of oxidative stress response and competence in H. pylori through multi-omics analysis.

17 citations

proteomicsbulk RNA-seq

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BioinformaticsBriefings in BioinformaticsPeer-reviewedAug 21, 2022

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data

Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch…·Michał Jan Burdukiewicz

This study shows that AMP prediction benchmarks are biased due to negative data selection and introduces a web server for fair benchmarking.

98 citationstop 1%

protein sequencemachine learning (classical)

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