Daniel J. Kim

This study identifies SerC as a critical metabolic enzyme in Mtb, showing its essential role in survival and revealing it as a potential drug target for TB therapy.

This study evaluates how large language models generate summaries of bioinformatics analyses, finding they produce readable and safe summaries but often misinterpret visualizations and lack novel insights.

CLUEY improves cell type detection and clustering in single-cell omics by integrating biological knowledge to guide clustering and enhance interpretability.

The paper develops a framework to characterize and design gene panels for spatially resolved omics, showing that both computational and manually curated panels have strengths in capturing cell types and reducing redundancy.

This study shows endogenous CGRP activates NRF2 via non-electrophilic mechanisms, with organ-specific pathways and time-dependent effects on oxidative stress resistance.

This study shows that both acute and chronic diving reflex activate NRF2 signaling, with acute exposure inducing stronger antioxidative gene expression than chronic exposure.

The paper creates an iPSC differentiation atlas and identifies TMEM88 as a regulator of mesendodermal development and blood pressure.

This study benchmarks retinal organoid protocols by comparing their cellular and molecular fidelity to fetal and adult human retinal tissues.