Author

Filipe Garrett Vieira

University of CopenhagenORCID 0000-0002-8464-7770Unclaimed ORCID profile · follow to get notified of new preprints

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Filipe Garrett Vieira1 paper

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Arman SimonyaniD· 1 shared Christina Bligaard PederseniD· 1 shared Christina Westmose YdeiD· 1 shared Emil Aputsiaq Flindt ChristenseniD· 1 shared Finn Cilius NielseniD· 1 shared Frederik Otzen BaggeriD· 1 shared George PachecoiD· 1 shared Gül Sude Demircan· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Arman SimonyanORCID

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2 papers

Recent·Most cited

Genomic differentiation among European perch in the western Baltic Sea reflects colonization history and local adaptation

Mikkel Skovrind, George Pacheco, Emil Aputsiaq Flindt Christensen, Shyam Gopalakrishnan, Katharina Fietz, Tore Hejl Holm-Hansen, Filipe Garrett Vieira, Marcus Anders Krag, Henrik Carl, Marcus Thomas P. Gilbert, Morten Tange Olsen, Peter Rask Møller

This study uses genomic data to show that brackish water perch in the Baltic Sea have distinct genetic clusters and that salinity tolerance genes are under selection, reflecting colonization history and local adaptation.

Fisheries Research · Sep 13, 2023Peer-reviewedMolecular Biology

A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

Miglė Gabrielaitė, Mathias Husted Torp, Malthe Sebro Rasmussen, Sergio Andreu‐Sánchez, Filipe Garrett Vieira, Christina Bligaard Pedersen, Savvas Kinalis, Majbritt Busk Madsen, Miyako Kodama, Gül Sude Demircan, Arman Simonyan, Christina Westmose Yde, Lars Rønn Olsen, Rasmus L. Marvig, Oľga Østrup, , Frederik Otzen Bagger

The paper benchmarks CNV detection tools on WGS and WES data using clinical standards and reference samples, finding that combining multiple tools improves recall but precision remains a challenge.

Cancers · Dec 14, 2021Peer-reviewedBioinformatics