Rasmus L. Marvig

Thirty years of Achromobacter ruhlandii evolution reveal pathways to epidemic lineages

This study analyzes the evolution of Achromobacter ruhlandii over 30 years, identifying genomic features associated with epidemic potential and chronic infections.

Recommendations for Bioinformatics in Clinical Practice

This paper provides consensus recommendations for standardizing bioinformatics practices in clinical whole genome sequencing to ensure accuracy, reproducibility, and comparability of results.

Chronic wounds and adaptive Pseudomonas aeruginosa: A phenotypic and genotypic characterization

This study examines Pseudomonas aeruginosa in chronic wounds, finding recurring genotypes with minor phenotypic and SNP differences, suggesting adaptation to the host environment.

A comparison of tools for copy-number variation detection in germline whole exome and whole genome sequencing data

The paper benchmarks CNV detection tools on WGS and WES data using clinical standards and reference samples, finding that combining multiple tools improves recall but precision remains a challenge.

Transmission and antibiotic resistance of Achromobacter in cystic fibrosis

The paper analyzes Achromobacter infections in cystic fibrosis patients using whole-genome sequencing to identify transmission patterns and antibiotic resistance development.

GenAPI: a tool for gene absence-presence identification in fragmented bacterial genome sequences

GenAPI identifies gene absence-presence in fragmented bacterial genomes, showing high sensitivity and precision compared to existing tools.