Author

Giovanni Dalmasso

European Molecular Biology LaboratoryORCID 0000-0002-8586-6027Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Organism:mouse· 1 Research Focus:software / tool· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

James A. SharpeiD· 2 shared Marco MusyiD· 2 shared Alexandre Robert‐MorenoiD· 1 shared Antoni MatyjaszkiewicziD· 1 shared Claudio Badía-Careaga· 1 shared Cristina PujadesiD· 1 shared Frederic UdinaiD· 1 shared Heura Cardona-BlayaiD· 1 shared

Activity by Year

2022-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

James A. SharpeORCID

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3 papers

Recent·Most cited

LimbLab: Pipeline for 3D Analysis and Visualisation of Limb Bud Gene Expression

Laura Aviñó-Esteban, Heura Cardona-Blaya, Marco Musy, Antoni Matyjaszkiewicz, James A. Sharpe, Giovanni Dalmasso

LimbLab provides a pipeline for 3D analysis and visualization of limb bud gene expression data, improving workflow efficiency and compatibility with existing tools.

BMC Bioinformatics · Jan 12, 2026Peer-reviewedBioinformatics

The Digital 3D-Atlas MAKER (DAMAKER): a dynamic and expandable digital 3D-tool for monitoring the temporal changes in tissue growth during hindbrain morphogenesis

Matthias Blanc, Giovanni Dalmasso, Frederic Udina, Cristina Pujades

The paper introduces DAMAKER, a 3D tool for tracking tissue growth and neuronal differentiation in zebrafish hindbrain over time using in vivo imaging and segmentation.

eLife · Sep 28, 2022Peer-reviewedDevelopmental Biology

4D reconstruction of developmental trajectories using spherical harmonics

Giovanni Dalmasso, Marco Musy, Martina Niksic, Alexandre Robert‐Moreno, Claudio Badía-Careaga, Juan José Sanz‐Ezquerro, James A. Sharpe

This paper introduces a method to reconstruct 4D developmental trajectories from 3D images using spherical harmonics, demonstrating its application to mouse limb buds and hearts.

Developmental Cell · Sep 1, 2022Peer-reviewedDevelopmental Biology