Author

Heura Cardona-Blaya

European Molecular Biology LaboratoryORCID 0000-0003-1766-6012Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Organism:mouse· 2 Research Focus:software / tool· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

James A. SharpeiD· 3 shared Laura Aviñó-EstebaniD· 2 shared Marco MusyiD· 2 shared Alexandre Robert‐MorenoiD· 1 shared Antoni MatyjaszkiewicziD· 1 shared Giovanni DalmassoiD· 1 shared James CotterelliD· 1 shared Jim SwogeriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 19 mutual co-author links

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3 shared papersBioinformatics

James A. SharpeORCID

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3 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedJan 12, 2026

LimbLab: Pipeline for 3D Analysis and Visualisation of Limb Bud Gene Expression

Laura Aviñó-Esteban, Heura Cardona-Blaya, Marco Musy…·Giovanni Dalmasso

LimbLab provides a pipeline for 3D analysis and visualization of limb bud gene expression data, improving workflow efficiency and compatibility with existing tools.

DOI 10.1186/s12859-025-06264-4

spatial transcriptomicsexperimental assay

𝕏 PostBluesky

Developmental BiologyDevelopmentPeer-reviewedFeb 15, 2025

Spatio-temporal Reconstruction of Gene Expression Patterns in Developing Mice

Laura Aviñó-Esteban, Heura Cardona-Blaya, James A. Sharpe

The paper reconstructs spatio-temporal gene expression patterns in developing mouse limbs using static snapshots, enabling analysis of gene dynamics across time.

6 citations

mousebulk RNA-seq

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Molecular BiologybioRxivPreprintMar 12, 2024

Cell 3D Positioning by Optical encoding (C3PO) and its application to spatial transcriptomics

James Cotterell, Jim Swoger, Alexandre Robert‐Moreno…·James A. Sharpe

C3PO reconstructs 3D cell positions after dissociation, enabling spatial transcriptomics with 3D structure preservation.

2 citations

mousespatial transcriptomics

𝕏 PostBluesky