Author

Yuanyuan Shen

Moffitt Cancer CenterORCID 0000-0002-8592-7723Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Biwei CaoiD· 2 shared Jose Ramon Conejo-GarciaiD· 2 shared Xiaoqing YuiD· 2 shared Xuefeng WangiD· 2 shared Amith R MurthyiD· 1 shared Chaofeng Qiao· 1 shared Daniel Abate‐DagaiD· 1 shared Fenfang LiiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Biwei CaoORCID

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3 papers

Recent·Most cited

A bottom-up approach to understanding ultrasound mediated blood-brain barrier opening using long and short pulses

Yuanyuan Shen, Yicong Cai, Chaofeng Qiao, Zhihui Liu, Yiluo Xu, Mengni Hu, Ji Zhang, Lin Ma, Fenfang Li

This study compares long and short pulse ultrasound effects on BBB opening, finding long pulses increase drug delivery but cause damage, while short pulses are safer and more uniform.

bioRxiv · Jun 11, 2025 · PreprintBiophysics

CGPA: multi-context insights from the cancer gene prognosis atlas

Biwei Cao, Xiaoqing Yu, Gullermo Gonzalez, Amith R Murthy, Tingyi Li, Yuanyuan Shen, Sijie Yao, Jose Ramon Conejo-Garcia, Peng Jiang, Xuefeng Wang

CGPA provides a platform for multi-context gene-centric prognostic analysis, enabling customized exploration of gene relationships and biomarker discovery in cancer research.

bioRxiv · Jul 19, 2024 · PreprintBioinformatics

A pan-cancer gamma delta T cell repertoire

Xiaoqing Yu, Li Song, Ling Cen, Biwei Cao, Ranran Tao, Yuanyuan Shen, Daniel Abate‐Daga, Paulo C. Rodrı́guez, Jose Ramon Conejo-Garcia, Xuefeng Wang

This paper analyzes 11,473 tumor samples across 33 cancer types to study gamma delta T cell receptor diversity and its prognostic potential, revealing its significance as a biomarker and therapeutic target.

bioRxiv · Jul 18, 2024 · PreprintGenomics