Author

Rachel Ofer

Rutgers, The State University of New JerseyORCID 0000-0002-8820-0837Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:human· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Jiekun YangiD· 2 shared Michael Paul VerziiD· 2 shared Tyler TraniD· 2 shared Xinyu HuiD· 2 shared Ankit SaxenaiD· 1 shared Chuhanwen Sun· 1 shared Curtis Krier· 1 shared Emmanuel Zachariah· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Jiekun YangORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 3, 2026

STCS: A Platform-Agnostic Framework for Cell-Level Reconstruction in Sequencing-Based Spatial Transcriptomics

L Wu, Xinyu Hu, Fengwei Zhan…·Jiekun Yang

STCS reconstructs cell-level gene expression from spatial transcriptomics data, improving accuracy across platforms and tissues.

DOI 10.64898/2026.02.26.708370

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Molecular BiologybioRxivPreprintAug 6, 2025

A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration

Rachel Ofer, Tyler Tran, Ping He…·Michael Paul Verzi

This study creates a spatiotemporal transcriptomic atlas of mouse intestinal regeneration following ionizing radiation, revealing transcriptional patterns and mechanisms of epithelial repair.

2 citations

mousespatial transcriptomics

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