Author

Xinyu Hu

Rutgers, The State University of New JerseyORCID 0000-0002-9211-1765Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Xinyu Hu1 paper · Huanghuai University

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Approach:statistical model· 3 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:human· 1

Frequent Co-Authors

Jiekun YangiD· 2 shared Michael Paul VerziiD· 2 shared Rachel OferiD· 2 shared Tyler TraniD· 2 shared Ankit SaxenaiD· 1 shared Christin L. WassermanniD· 1 shared Chuhanwen Sun· 1 shared Curtis Krier· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Jiekun YangORCID

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3 papers

Recent·Most cited

STCS: A Platform-Agnostic Framework for Cell-Level Reconstruction in Sequencing-Based Spatial Transcriptomics

L Wu, Xinyu Hu, Fengwei Zhan, Chuhanwen Sun, Jose Gonzales, Rachel Ofer, Tyler Tran, Michael Paul Verzi, Liping Liu, Jiekun Yang

STCS reconstructs cell-level gene expression from spatial transcriptomics data, improving accuracy across platforms and tissues.

bioRxiv · Mar 3, 2026 · PreprintBioinformatics

A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration

Rachel Ofer, Tyler Tran, Ping He, Xia Qiu, Xinyu Hu, Emmanuel Zachariah, Curtis Krier, Ankit Saxena, Jiekun Yang, Michael Paul Verzi

This study creates a spatiotemporal transcriptomic atlas of mouse intestinal regeneration following ionizing radiation, revealing transcriptional patterns and mechanisms of epithelial repair.

bioRxiv · Aug 6, 2025 · PreprintMolecular Biology

Multimodal screen reveals noise regulatory proteins

Óscar García‐Blay, Xinyu Hu, Christin L. Wassermann, Tom van Bokhoven, Fréderique M.B. Struijs, Maike M. K. Hansen

The paper identifies 32 putative noise regulators, including SON, which modulate transcriptional noise without affecting mean expression levels and influence cell fate decisions in mouse embryonic stem cells.

bioRxiv · Jul 17, 2024 · PreprintSystems Biology