Author

Yohsuke T. Fukai

RIKENORCID 0000-0002-8860-7178Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:imaging· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Assay:Hi-C· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Kyogo KawaguchiiD· 2 shared Alexander Jovanovic· 1 shared Ali Erturk· 1 shared Carsten MarriD· 1 shared Chiharu TanegashimaiD· 1 shared Denis SchapiroiD· 1 shared Dirk LoeffleriD· 1 shared Germán Camargo OrtegaiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBiophysics

Kyogo KawaguchiORCID

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3 papers

Recent·Most cited

BioengineeringbioRxivPreprintOct 27, 2026

BaSiCPy: Scalable and Robust Shading Correction for Optical Microscopy Images

Yu Liu, Yohsuke T. Fukai, Santiago E. Caño Muñiz…·Tingying Peng

BaSiCPy improves illumination correction in microscopy images by addressing foreground correlations and enabling automated processing.

DOI 10.64898/2026.04.28.721386

imagingexperimental assay

𝕏 PostBluesky

BiophysicsScience AdvancesPeer-reviewedNov 19, 2025

Gene-scale in vitro reconstitution reveals histone acetylation directly controls chromatin architecture

Yohsuke T. Fukai, Tomoya Kujirai, Masatoshi Wakamori…·Kyogo Kawaguchi

This study reconstitutes gene-scale chromatin arrays with controlled histone modifications to show acetylation increases structural fluctuations and reduces nucleosome contact frequency.

14 citationstop 5%

Hi-Clong-read sequencing

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BioinformaticsBioinformaticsPeer-reviewedDec 10, 2022

LapTrack: Linear assignment particle tracking with tunable metrics

Yohsuke T. Fukai, Kyogo Kawaguchi

LapTrack improves particle tracking by solving a linear assignment problem with customizable metrics and parallel parameter tuning, enhancing tracking accuracy on real and artificial datasets.

27 citations

imagingstatistical model

𝕏 PostBluesky