Author

Santiago E. Caño Muñiz

University of BaselORCID 0000-0002-9808-7030Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioengineering· 1 Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:software / tool· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alexander Jovanovic· 2 shared Lucas BoeckiD· 2 shared Tingying PengiD· 2 shared Ahmad Sadeghi· 1 shared Ali Erturk· 1 shared Andréanne LupieniD· 1 shared Andreas H. Diacon· 1 shared Andreas Wüst· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioengineering

Alexander Jovanovic

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BaSiCPy: Scalable and Robust Shading Correction for Optical Microscopy Images

Yu Liu, Yohsuke T. Fukai, Santiago E. Caño Muñiz, Victor Perez, Mihail Todorov, Germán Camargo Ortega, Timothy Morello, Alexander Jovanovic, Dirk Loeffler, Johannes Christian Paetzold, Xun Xu, Nan Ma, Lorenz Lamm, Timm Schroeder, Lucas Boeck, , Tingying Peng

BaSiCPy improves illumination correction in microscopy images by addressing foreground correlations and enabling automated processing.

bioRxiv · Oct 27, 2026 · PreprintBioengineering

WGCNA+: AI-powered WGCNA for Integration of Multi-Omics Data

Antonino Zito, Xavier Escribà-Montagut, Santiago E. Caño Muñiz, Axel Martinelli, Murodzhon Akhmedov, Ivo Kwee

WGCNA+ extends WGCNA to multi-omics data, enabling cross-omics module analysis and visualization with AI-powered interpretation.

bioRxiv · Sep 7, 2026 · PreprintBioinformatics

Antibiotic lethality dictates mycobacterial infection outcomes

Alexander Jovanovic, Frederick K. Bright, Ahmad Sadeghi, Basil Wicki, Santiago E. Caño Muñiz, Greta C. Giannini, Sara Toprak, Loïc Sauteur, Anna Rodoni, Andreas Wüst, Andréanne Lupien, Sònia Borrell, Dorothy Grogono, Nicole E. Wheeler, Philippe Dehio, , Lucas Boeck

This study introduces ASCT to assess bacterial killing in real-time and links drug tolerance to clinical outcomes in mycobacterial infections.

Nature Microbiology · Jan 9, 2026Peer-reviewedMicrobiology