Esteban Emanuel Nieto

PHI: A Galaxy-based workflow for reproducible prophage-host interaction analysis and standardized viral-genomics reporting

PHI is a Galaxy-based workflow that automates prophage-host interaction analysis and generates standardized reports, detecting 41 prophages across 14 hosts in a mock community.

Improving PAH-chronically contaminated soil bioremediation using a combined strategy of bioaugmentation and surfactant-enhanced biostimulation

This study compares bioaugmentation and a combined strategy with surfactant-enhanced biostimulation for remediating aged PAH-contaminated soil, finding that the combined approach with SC4 consortium significantly improves PAH degradation.

Effects of a novel Paraburkholderia phage IPK on the phenanthrene degradation efficiency of the PAH-degrading strain Paraburkholderia caledonica Bk.

This study isolates and characterizes a novel phage IPK that enhances phenanthrene degradation by its host Paraburkholderia caledonica Bk, showing higher degradation efficiency at higher MOI.

Challenging the impact of consortium diversity on bioaugmentation efficiency and native bacterial community structure in a freshly PAH-contaminated soil

The paper evaluates how different bacterial consortia affect PAH degradation and soil microbiome structure, finding that low-diversity inoculants can effectively interact with native communities when PAHs are added.

Analysis of predation-driven inoculum loss and carbon flow in bioaugmented soils through DNA-SIP

This study tracks the fate of 13C-labelled pollutant-degrading inoculum in two soils using DNA-SIP, revealing differences in predation effects and inoculum establishment between short-term and long-term polluted soils.