Author

Nathalie Gaudreault

Allen Institute for Cell ScienceORCID 0000-0002-9220-5366Unclaimed ORCID profile · follow to get notified of new preprints

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Nathalie Gaudreault5 papers · Allen Institute for Brain Science

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Cell Biology· 2

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Research Focus:cell type annotation· 2 Approach:contrastive learning· 2 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:drug response / drug discovery· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Matheus Palhares VianaiD· 2 shared Susanne M. RafelskiiD· 2 shared Alexandra J. Ferrante· 1 shared Antoine BorensztejniD· 1 shared Assaf ZaritskyiD· 1 shared Benjamin MorrisiD· 1 shared Christopher L. FrickiD· 1 shared Daniel Saelid· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersCell Biology

Matheus Palhares VianaORCID

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2 papers

Recent·Most cited

Trustworthy in silico labeling via semantic visual interpretability of image-to-image translation

Lion Ben Nedava, Gad Miller, Nitsan Elmalam, Matheus Palhares Viana, Jianxu Chen, Nathalie Gaudreault, Susanne M. Rafelski, Assaf Zaritsky

The paper introduces Mask Interpreter, a method to improve interpretability of image-to-image translation models, validating biological relevance and identifying artifacts in in silico labeling.

bioRxiv · Aug 17, 2026 · PreprintCell Biology

Interpretable representation learning for 3D multi-piece intracellular structures using point clouds

Ritvik Vasan, Alexandra J. Ferrante, Antoine Borensztejn, Christopher L. Frick, Philip Garrison, Nathalie Gaudreault, Saurabh S. Mogre, Fatwir S. Mohammed, Benjamin Morris, Guilherme G. P. Freitas Pires, Daniel Saelid, Susanne M. Rafelski, Julie A. Theriot, Matheus Palhares Viana

This paper introduces a morphology-appropriate representation learning framework for 3D multi-piece intracellular structures, showing improved sub-cluster discovery and phenotypic profiling.

Nature Methods · Jul 1, 2025Peer-reviewedCell Biology