Angel Amores

Complete de novo assembly and re-annotation of the zebrafish genome

The paper presents a new zebrafish genome assembly with increased sequence coverage and improved annotation, along with a pangenome resource for variant analysis.

RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data

RADSex is a computational workflow for analyzing RAD-Seq data to identify sex determination systems, uncovering new sex-specific markers in fish species.

Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

Chromonomer improves genome assemblies by integrating genetic maps and conserved synteny to correct structural errors and produce enhanced chromosome models.

Epigenetic factors coordinate intestinal development

This paper shows DNA methylation factors are crucial for intestinal development across multiple cell types, including neurons and smooth muscle, and identifies them as potential Hirschsprung disease candidates.