Author

Jiapei Yuan

Chinese Academy of Medical Sciences & Peking Union Medical CollegeORCID 0000-0002-9381-8623Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 3 Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Michael Q. ZhangiD· 2 shared Yang Yang· 2 shared Zhi John LuiD· 2 shared Ahmed A. AbbasiD· 1 shared Dong Wang· 1 shared Dongfang WangiD· 1 shared Guijuan Luo· 1 shared Guishuai Lv· 1 shared

Activity by Year

2015-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Michael Q. ZhangORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features

Ahmed A. Abbas, Khyati Raghunath Chandratre, Yunpeng Gao, Jiapei Yuan, Michael Q. Zhang, Ram Shankar Mani

The paper introduces ChIPr, a model predicting cohesin-mediated chromatin interactions from 2D features, showing strong correlation with ChIA-PET data and capturing cell-type-dependent loops.

Genome biology · Jan 12, 2024Peer-reviewedGenomics

Recurrently deregulated lncRNAs associated with HCC tumorigenesis and metastasis revealed by genomic, epigenomic and transcriptomic profiling in paired primary tumor and PVTT samples

Yang Yang, Lei Chen, Jin Gu, Hanshuo Zhang, Jiapei Yuan, Qiuyu Lian, Guishuai Lv, Siqi Wang, Yang Wu, Yu-Cheng T. Yang, Dongfang Wang, Yang Liu, Jing Tang, Guijuan Luo, Yang Li, , Zhi John Lu

The paper identifies recurrently deregulated lncRNAs in HCC and PVTT samples, linking them to metastasis and prognosis using multi-omics data.

bioRxiv · Apr 26, 2016Genomics

Comprehensive mapping of mammalian transcriptomes identifies conserved genes associated with different cell differentiation states

Yang Yang, Yu-Cheng Thomas Yang, Jiapei Yuan, Xiaohua Shen, Zhi John Lu, Jingyi Jessica Li

The paper integrates RNA-seq data from four mammals to map cell states, identifies conserved genes, and finds distinct evolutionary signatures in neural and testis tissues.

bioRxiv · Jul 15, 2015Systems Biology