Author

Khyati Raghunath Chandratre

Biogen (United States)ORCID 0000-0003-3698-3670Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Ahmed A. AbbasiD· 1 shared Baobao SongiD· 1 shared Baohong ZhangiD· 1 shared Dann Huh· 1 shared Fergal CaseyiD· 1 shared Haotian ZhangiD· 1 shared Houlin YuiD· 1 shared Jake Gagnon· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Ahmed A. AbbasORCID

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2 papers

Recent·Most cited

BioinformaticsJournal of Advance Research in Pharmacy & Biological SciencePeer-reviewedJan 19, 2026

SpaceSequest: A unified pipeline for spatial transcriptomics data analysis

Yu Henry Sun, Sarbottam Piya, Zhengyu Ouyang…·Baohong Zhang

SpaceSequest provides a unified pipeline for analyzing spatial transcriptomics data from multiple platforms, enabling standardized processing, analysis, and visualization.

2 citations

spatial transcriptomicsstatistical model

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedJan 12, 2024

Accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features

Ahmed A. Abbas, Khyati Raghunath Chandratre, Yunpeng Gao…·Ram Shankar Mani

The paper introduces ChIPr, a model predicting cohesin-mediated chromatin interactions from 2D features, showing strong correlation with ChIA-PET data and capturing cell-type-dependent loops.

13 citations

humanChIP-seq

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