Author

Christopher S. Miller

University of Colorado DenverORCID 0000-0002-9448-8144Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

Christopher Scott HenryiD· 2 shared Kelly C. WrightoniD· 2 shared Mikayla A. BortoniD· 2 shared Rory M. FlynniD· 2 shared Adrienne B. NarroweiD· 1 shared Andrew P. FreiburgeriD· 1 shared Angela M. Oliverio· 1 shared Annika C. MosieriD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersBioinformatics

Christopher Scott HenryORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

EC-Bench: A Benchmark for Enzyme Commission NumberPrediction

Sara Davoudi, Christopher Scott Henry, Christopher S. Miller, Farnoush Banaei‐Kashani

EC-Bench provides a benchmark for evaluating EC number prediction methods, comparing existing approaches and highlighting task-specific performance variations.

Bioinformatics Advances · Jan 1, 2026Peer-reviewedBioinformatics

Community and functional stability in a working bioreactor degrading 1,4-dioxane at the Lowry Landfill Superfund Site

Jessica L. Romero, Jack H. Ratliff, Christopher J. Carlson, Daniel R. Griffiths, Christopher S. Miller, Annika C. Mosier, Timberley M. Roane

This study analyzes microbial communities and potential dioxane degradation mechanisms in a bioreactor at a Superfund site using 16S rRNA and shotgun metagenomic sequencing.

Applied and Environmental Microbiology · Sep 23, 2025Peer-reviewedMicrobiology

Mapping the soil microbiome functions shaping wetland methane emissions

Mikayla A. Borton, Angela M. Oliverio, Adrienne B. Narrowe, Jorge A. Villa, Christian Rinke, David W. Hoyt, Pengfei Liu, Bridget B. McGivern, Emily K. Bechtold, Jared B. Ellenbogen, Rebecca A. Daly, Garrett J. Smith, Jordan C. Angle, Rory M. Flynn, Andrew P. Freiburger, , Kelly C. Wrighton

The paper maps soil microbiome functions in wetlands to understand methane emissions by analyzing microbial communities and gene expression across spatial and temporal gradients.

bioRxiv · Feb 6, 2024Microbiology

A Conserved Electrostatic Membrane-Binding Surface in Synaptotagmin-Like Proteins Revealed Using Molecular Phylogenetic Analysis and Homology Modeling

Nara L. Chon, Sherleen Tran, Christopher S. Miller, Hai Lin, Jefferson D. Knight

The paper uses molecular phylogenetic analysis and homology modeling to show that the electrostatic membrane-binding surface of synaptotagmin-like proteins is highly conserved across vertebrates.

Protein Science · Dec 1, 2023Peer-reviewedBioinformatics

kb_DRAM: Annotating and functional profiling of genomes with DRAM in KBase

Michael Shaffer, Mikayla Borton, Benjamin Bolduc, José P. Faria, Rory M. Flynn, Parsa Ghadermazi, Janaka N. Edirisinghe, Elisha M. Wood‐Charlson, Christopher S. Miller, Siu Hung Joshua Chan, Matthew B. Sullivan, Christopher S. Henry, Kelly C. Wrighton

kb_DRAM integrates DRAM tools into KBase for microbial and viral genome annotation and metabolic modeling through a user-friendly interface.

Bioinformatics · Feb 28, 2023Peer-reviewedBioinformatics