Author

Elena Del Pup

Wageningen University & ResearchORCID 0000-0002-9472-918XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Assay:metabolomics· 2 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Justin J. J. van der HooftiD· 3 shared Marnix H. MedemaiD· 3 shared Anne OsbourniD· 1 shared Arjan DraismaiD· 1 shared Charlotte OweniD· 1 shared Denise SlenteriD· 1 shared Egon WillighageniD· 1 shared Guy PolturakiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersBioinformatics

Justin J. J. van der HooftORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

PlantMetWiki: a FAIR knowledge graph for plant metabolic pathway cross-species representation and integration

Elena Del Pup, M Muller, Marvin Martens, Egon Willighagen, Marnix H. Medema, Denise Slenter, Justin J. J. van der Hooft

PlantMetWiki integrates plant metabolic pathway data across species to enable cross-species analysis and hypothesis generation.

bioRxiv · Jul 26, 2026 · PreprintBioinformatics

plantiSMASH 2.0: improvements to detection, annotation, and prioritization of plant biosynthetic gene clusters

Elena Del Pup, Charlotte Owen, Ziqiang Luo, Hannah E. Augustijn, Arjan Draisma, Guy Polturak, Satria Ardhe Kautsar, Anne Osbourn, Justin J. J. van der Hooft, Marnix H. Medema

plantiSMASH 2.0 improves detection, annotation, and prioritization of plant biosynthetic gene clusters by expanding BGC types and adding substrate prediction and regulatory analysis.

Journal of Molecular Biology · Apr 8, 2026Peer-reviewedBioinformatics

MEANtools: multi-omics integration towards metabolite anticipation and biosynthetic pathway prediction

Kumar Saurabh Singh, Hernando G. Suárez Duran, Elena Del Pup, Olga Zafra‐Delgado, Saskia C. M. Van Wees, Justin J. J. van der Hooft, Marnix H. Medema

MEANtools predicts metabolic pathways de novo by integrating transcriptomic and metabolomic data using reaction rules and enzyme families.

PLoS Biology · Jul 28, 2025Peer-reviewedBioinformatics