Author

Martin Fergie

University of ManchesterORCID 0000-0002-9531-6109Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 1 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:imaging· 1 Approach:microscopy & imaging analysis· 1 Organism:mouse· 1

Frequent Co-Authors

Magnus RattrayiD· 2 shared Claire O’LearyiD· 1 shared Fayyaz MinhasiD· 1 shared Federico RoncaroliiD· 1 shared Gerben R. BorstiD· 1 shared Hannah E TompkinsiD· 1 shared James E ParkinsoniD· 1 shared Karen Piper HanleyiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Magnus RattrayORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedAug 25, 2026

DeepPathway: Predicting Pathway Expression from Histopathology Images

Muhammad Ahsan, Karen Piper Hanley, Martin Fergie…·Syed Murtuza Baker

DeepPathway predicts pathway expression from H&E images using contrastive learning, validated on prostate cancer and brain tumor datasets.

1 citation

humanspatial transcriptomics

𝕏 PostBluesky

ImmunologyMolecular Systems BiologyPeer-reviewedJul 20, 2026

Extracellular matrix phenotyping by imaging mass cytometry defines distinct cellular matrix environments associated with allergic airway inflammation.

James E Parkinson, Morgan Bryant, Mohamed Ghafoor…·Tara E. Sutherland

The paper uses imaging mass cytometry to analyze ECM composition in mouse models of allergic airway inflammation, identifying distinct matrix environments associated with different cell types and tissue regions.

4 citations

𝕏 PostBluesky