Author

Rodolfo S. Allendes Osorio

National Institute of Biomedical Innovation, Health and NutritionORCID 0000-0002-9627-9338Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Attayeb S. MohseniD· 1 shared Chihiro HiguchiiD· 1 shared Kenji MizuguchiiD· 1 shared Masaki KimuraiD· 1 shared Takahiro NemotoiD· 1 shared Takanori TakebeiD· 1 shared Toshiya Nishimura· 1 shared Y. Ann CheniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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1 shared paperBioinformatics

Attayeb S. MohsenORCID

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2 papers

Recent·Most cited

OddSNP: a predictive framework for optimizing multiplexed single-cell RNA-seq experiments

Rodolfo S. Allendes Osorio, Toshiya Nishimura, Yuichi Shigihara, Masaki Kimura, Takanori Takebe, Takahiro Nemoto

OddSNP predicts the success of multiplexed single-cell RNA-seq experiments using SNP-IC and cpSNP-IC metrics to optimize sequencing depth and donor complexity.

bioRxiv · Dec 11, 2025 · PreprintBioinformatics

Snaq: A Dynamic Snakemake Pipeline for Microbiome data analysis with QIIME2

Attayeb S. Mohsen, Y. Ann Chen, Rodolfo S. Allendes Osorio, Chihiro Higuchi, Kenji Mizuguchi

Snaq automates 16S microbiome data analysis with QIIME2 using a Snakemake pipeline, reducing manual effort and parameter confusion through a single command-line instruction.

Frontiers in Bioinformatics · Jul 1, 2022Peer-reviewedBioinformatics