Author

Ümit Akköse

Sabancı ÜniversitesiORCID 0000-0002-9731-3702Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:protein structure· 1

Frequent Co-Authors

Ogün AdebalıiD· 3 shared Adam BrowniD· 1 shared Anne D. YoderiD· 1 shared Aziz SancariD· 1 shared Batu ErmaniD· 1 shared Büşra ŞimşekiD· 1 shared Canan AtılganiD· 1 shared Canberk Yarkın YeşiladaiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersBioinformatics

Ogün AdebalıORCID

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3 papers

Recent·Most cited

Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis

Ümit Akköse, Ogün Adebalı

Boquila simulates NGS reads to correct nucleotide bias by mimicking true read profiles from specified genomic regions.

TURKISH JOURNAL OF BIOLOGY · Jan 1, 2023Peer-reviewedBioinformatics

Sibling rivalry among the ZBTB transcription factor family: homo vs. heterodimers

Sofia Piepoli, Sarah Barakat, Liyne Nogay, Büşra Şimşek, Ümit Akköse, Hakan Taskiran, Nazife Tolay, Melike Gezen, Canberk Yarkın Yeşilada, Mustafa Tuncay, Ogün Adebalı, Canan Atılgan, Batu Erman

This study investigates heterodimer formation among ZBTB transcription factors, confirming physical interactions and co-expression in immune cells, and analyzing energetic determinants of homo and heterodimer formation.

Life Science Alliance · Sep 12, 2022Peer-reviewedMolecular Biology

Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

Ümit Akköse, Veysel Oğulcan Kaya, Laura A. Lindsey‐Boltz, Zeynep Karagoz, Adam Brown, Peter A. Larsen, Anne D. Yoder, Aziz Sancar, Ogün Adebalı

The paper compares UV repair efficiency and patterns between humans and mouse lemurs, finding similar repair mechanisms but differences in efficiency.

BMC Genomics · Aug 6, 2021Peer-reviewedGenomics