Alfredo Pulvirenti

geneslator: an R package for comprehensive gene identifier conversion and annotation

geneslator provides a unified R package for gene identifier conversion, ortholog mapping, and pathway annotation across eight species, improving data integration and cross-species analysis.

Root-associated microbial community recruitment in two citrus rootstocks subjected to water and salinity stresses

This study examines how water and salinity stresses affect microbial communities in two citrus rootstocks, finding that Bitters shows better stress tolerance with distinct microbial associations.

Harnessing gene-gene interactions via an RNA-Sequencing network analysis framework improves precision medicine prediction in rheumatoid arthritis

This study uses gene-gene interaction networks from RNA-Seq data to improve prediction of treatment response in rheumatoid arthritis.

PHENSIM: Phenotype Simulator

PHENSIM simulates cell phenotype changes due to biomolecule activation/inhibition using signaling pathways, showing high prediction accuracy through benchmarking.